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11    608502 
11    1016988 
11    1017495 
11    1018088 
11    3661585

#!/usr/bin/perl
use warnings;
...
}

close $outfile;

##fileformat=VCFv4.1
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
...
1    1647893    .    C    CTTTCTT    30    FINAL_NOT_CONFIRMED    SF=b
+cm_illum,bcm_solid;validation_ratio=0/3380;sets=bcm_illum,bcm_solid;s
+amples=NA19238    GT    0/0
1    7889972    rs57875989    GAGAATCCATCCCATCCTACTGCCAGCGCTCTGTCCACAG
+GATCGCCTCCCATGA    G    33190    DESIGN_FAIL    SF=bi_illum    GT    
+./.
1    14106394    .    A    ACTC    100    FINAL_CONFIRMED    SF=bcm_il
+lum,bcm_solid,bc_illum;validation_ratio=864/1754;sets=bcm_illum,bcm_s
+olid,bc_illum;samples=NA19238    GT    1/0