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CHR1 CHR2 SNP1 SNP2 OR_INT STAT P
17 18 rs9912311 rs9965425 0.9307 0.06328 0.8014
...
17 18 rs9912101 rs9959874 0.9507 0.0376 0.8462
17 18 rs9912101 rs1893506 1.029 0.007849 0.9294
17 18 rs9905581 rs9965425 0.9003 0.1249 0.7238

use strict; use warnings;
use File::Slurp qw(read_file);
...
}

close OF;