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  1. or download this
    #!/usr/bin/perl -w
    
    ...
            $rmsd = sqrt ($sum1);
            print"$rmsd\n";
    }
    
  2. or download this
    Use of uninitialized value $xC1 in subtraction (-) at getrmsd2.pl line
    + 80.
    Use of uninitialized value $yC1 in subtraction (-) at getrmsd2.pl line
    + 80.
    ...
    Use of uninitialized value $zC13 in subtraction (-) at getrmsd2.pl lin
    +e 82.
    70.8509364158301
    1.68309110468408