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#!/usr/bin/perl
use warnings;  
use strict; 
...
          sample3: @mod_sam3\n\n";   

exit;

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Original big array: a b c d 1 2 3 4 x1 x2 x3 x4 
Resultant big array: a b d 1 2 4 x1 x2 x4 
Deleted Element: x3  
Modified @sample1: a b d 
         @sample2: 1 2 4 
         @sample3: x1 x2 x4