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#!/usr/bin/env perl

use warnings;
...
} else {
    die "Unfortunately, the two sequences are not reverse-complement.\
+n";
}

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$ perl 1041523.pl GGGGaaaaaaaatttatatat atatataaattttttttcccc
Yes, the two sequences are reverse-complement of each other.
$ perl 1041523.pl GGGGaaaaaaaatttatatat atatataaattttatttcccc
Unfortunately, the two sequences are not reverse-complement.