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#!/usr/bin/perl -w
use strict;
...
                
}
print Dumper \%hash;

Amino Acid Switch Probabiities        AAA       AAC       AAG       AA
+T       ACA       ACC       ACG       ACT       AGA       AGC       A
+GG       AGT       ATA       ATC       ATG       ATT
AAA    0.40849    0.01506    0.26198    0.01904    0.01527    0.0065  
+  0.01149    0.00774    0.09164    0.00886    0.06529    0.01076    0
+.0066    0.00143    0.00546    0.00199
...
ATC    0.00101    0.00324    0.00095    0.00224    0.00691    0.01517 
+   0.0077    0.00905    0.00112    0.0047    0.00111    0.00279    0.
+18032    0.36846    0.02111    0.22364
ATG    0.00423    0.00224    0.00584    0.00277    0.01992    0.01108 
+   0.02671    0.01278    0.00419    0.00321    0.00639    0.00348    
+0.04935    0.02313    0.58867    0.0273
ATT    0.00123    0.00193    0.00097    0.0035    0.00763    0.00826  
+  0.00788    0.01538    0.0012    0.003    0.00113    0.00512    0.16
+368    0.19576    0.02181    0.31668