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0   50   2   48   654732   0   1   1   1   0   2   3   2   1   3 
0   50   4   46   723430   0   2   1   2   1   1   1   1   3   1

#!usr/bin/perl -w
...
        }
}

 Use of uninitialized value within @SNPs in concatenation (.) or strin
+g at temp_file_test.pl line 36, <CG> line 1112424.