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  1. or download this
    open(INPUT, "/Users/logancurtis-whitchurch/Dropbox/thesis_folder/conse
+nsus_files/mask_files/mask."."$population".".chr.23.txt") or die "can
+'t open masked file\n";
;;
my $input = <INPUT>;
...
chomp($input);
;;
my @info = split( //, $input );
  2. or download this
     input format for intervals: 

chrX    1    6000
...
;;
my $end = $site_info[2];
;;