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  1. or download this
    perl preprocess2_LDfiles.pl  "i am snpF file" iamgffile "i am path inc
+luding pth file"  pS-population-symbol 


perl preprocess2_LDfiles.pl  "i am snpF file" iamgffile "i am path inc
+luding pth file"  pS-population-symbol    th=.8