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  1. or download this
    #!/usr/bin/env perl -l
    
    ...
    H chr2 100
    I chr2 200
    J chr2 200
    
  2. or download this
    Reads by specific chromosome and location:
    Reads on CHR:chr1 LOC:100 = 3
    ...
    Reads on CHR:chr1 LOC:300 = 3
    Reads on CHR:chr2 LOC:100 = 1
    Reads on CHR:chr2 LOC:200 = 2
    
  3. or download this
        push @{$count{$chr}{$loc}}, $seq;
        #++$count{$chr}{$loc};
    ...
    ...
                print "Reads on CHR:$chr LOC:$loc = ", scalar @{$count{$ch
    +r}{$loc}};
                #print "Reads on CHR:$chr LOC:$loc = ", $count{$chr}{$loc}
    +;