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#!/usr/bin/env perl -l ... H chr2 100 I chr2 200 J chr2 200
Reads by specific chromosome and location: Reads on CHR:chr1 LOC:100 = 3 ... Reads on CHR:chr1 LOC:300 = 3 Reads on CHR:chr2 LOC:100 = 1 Reads on CHR:chr2 LOC:200 = 2
push @{$count{$chr}{$loc}}, $seq; #++$count{$chr}{$loc}; ... ... print "Reads on CHR:$chr LOC:$loc = ", scalar @{$count{$ch +r}{$loc}}; #print "Reads on CHR:$chr LOC:$loc = ", $count{$chr}{$loc} +;