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  1. or download this
     open (CG, "<$cg_input") or die "can't open $cg_input\n";
my @SNPs = <CG>;
close(CG); 
...
}
close(INTERVAL);
  2. or download this
     Use of uninitialized value in split at filter.CGS.pl line 43, <INTERV
+AL> line 264.
Use of uninitialized value $position in numeric lt (<) at filter.CGS.p
+l line 46, <INTERVAL> line 264.
Use of uninitialized value $position in numeric lt (<) at filter.CGS.p
+l line 46, <INTERVAL> line 264.
Use of uninitialized value $position in numeric ge (>=) at filter.CGS.
+pl line 50, <INTERVAL> line 264.
Use of uninitialized value $position in numeric gt (>) at filter.CGS.p
+l line 54, <INTERVAL> line 264.
Use of uninitialized value in split at filter.CGS.pl line 43, <INTERVA
+L> line 264.