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ID:A0AWZ5
HIT:PF12951    SCORE:40.0    EVALUE:2.2e-10    HMM_START:2    HMM_END:
+32    SEQ_START:421    SEQ_END:455
HIT:PF03797    SCORE:130.7    EVALUE:3.6e-40    HMM_START:7    HMM_END
+:261    SEQ_START:822    SEQ_END:1073
HIT:PF12951    SCORE:38.7    EVALUE:5.5e-10    HMM_START:1    HMM_END:
+32    SEQ_START:515    SEQ_END:547
//

$/="//\n";
while(<>)
...
    }
}
$/="\n";

A0AWZ5
0        [ PF12951 421 455 ],
1        [ PF03797 822 1073 ],
2        [ PF12951 515 547 ],