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File:
ID    Symbol    Taxon    Taxon Name    Evidence    GO ID    GO Name   
+ Aspect    Reference    With    Source
...
H1SY06    Symbol5    12345    Homo Sapiens    IEA    GO:0004129    cyt
+ochrome-c oxidase activity    Function    GO_REF:0000002    InterPro:
+IPR000883|InterPro:IPR004677|InterPro:IPR023615|InterPro:IPR023616   
+ InterPro
H1SY06    Symbol5    12345    Homo Sapiens    IEA    GO:0004129    cyt
+ochrome-c oxidase activity    Function    GO_REF:0000003    EC:1.9.3.
+1    UniProt
H1SY06    Symbol5    12345    Homo Sapiens    IEA    GO:0005506    iro
+n ion binding    Function    GO_REF:0000002    InterPro:IPR000883    
+InterPro

Code:
open(IN,$annotationfile) or die "Can't open $annotationfile\n";
...
}
}
}