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  1. or download this
    my $i = 0;
foreach my $match(@exonic_matches) { 
...
$value = $exon_ID[$i];
$col = $exon_left{$value};
#...
  2. or download this
    my $i = 0;

...
    $col = $exon_left{$value};
    #...
}
  3. or download this
    my $i = 0;

...
    $col = $exon_left{$value};
    #...
}
  4. or download this
        if ($strands{$value} =~ m/\+/) {

    $diff_three_prime = $LBP[$i] - $three_prime_ss[$exons2{$value} - 1
+]; 
    $diff_five_prime = $LBP[$i] - $five_prime_ss[$exons2{$value} - 1];
+ 
    # ...
  5. or download this
        if ($strands{$value} =~ m/\+/) {
        $diff_three_prime = $LBP[$i] - $three_prime_ss[$exons2{$value}
+ - 1]; 
        $diff_five_prime = $LBP[$i] - $five_prime_ss[$exons2{$value} -
+ 1]; 
        # ...