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#!/usr/bin/perl -w                                                    
+          
use strict;
...
    print "$key\t$hash{$nt}\n";
}

300     dG = -62.54   [initially -70.70] gi178893_M23263_rna_300-1 
1    G    0    2    0    1
...
17    A    16    18    27    17
18    A    17    19    26    18
19    C    18    20    25    19