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use 5.026;
use warnings;
...
}

close $dnaFH or die $!;

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Sequence: TAAGAACAATAAGAACAAGAACAATAA -- Length 27
     Sequence is GOOD!
...
     3 bad positions, 8.57% of total
Sequence: ACAATAAAAGAACAATAAGAA -- Length 21
     Sequence is GOOD!