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AAF88103.1 zinc finger protein 226 [Homo sapiens]MNMFKEAVTFKDVAVAFTEEE
+LGLLGPAXRKLYRD
VMVENFRNLLSVGHPPFKQDVSPIERNEQLWIMTTATRRQGNLGEKNQSKLITVQDRESEEELSCWQIWQ
+QIANDLT
RCQDSMINNSQCHKQGDFPYQVGTELSIQISEDENYIVNKADGPNNTGNPEFPILRTQDSWRKTFLTESQ
+RLNRDQQI
...
IHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECG
+KSFGRSAHLQ
AHQKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKC
+DVCGKVF
SRSSQLQSHQRVHTGEKPYKCEICGKSFSWRSNLTVHHRIHVGDKSYKSNRGGKNIRESTQEKKSIK

  open FILE1, "file,fasta" or die;

while (my $line=<FILE1>) {
...
}else{
    print "The protein doesn't contain the domain";
}