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    for my $oligo_indice ( 0 .. $#{ $self->{oligo_ref} } ) {
        # INSERT debug code below - this must be around line 474 :
...
        $hd_sum[$oligo_indice] =
            List::Util::sum( @{ $self->{hd_matrix_ref}->[$oligo_indice
+] } );
    }

for my $oligo_indice ( 0 .. $#{ $self->{oligo_ref} } ) {
 #print "index: $oligo_indice (";
...
 }
 #print "\n";
}