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#!usr/bin/perl -w
use strict;
...
    print "For $name we found $found of a total $totalist\n";
    }
}

>VFG000033(gb|WP_002208793) 
MPPAARLSLLQRSSTMSDFLPFALPDIGEAEIQAVTESMRSGWLTTGPNAREFEREFAAY
...
MQFIDLKTQYQALRDTINPRIQAVLDHGQFIMGPEVKELEAALCAYTGAKHCITVASGTE
ALLISLMALGVKAGDEVITTSFTFVATAEVIALLGAKPVFVDVEPDTCNIKVSEIEAKIT
PRTKAIIPVSLYGQCGDMDEV

WP_002208793
WP_002208792
...
NP_490509
NP_459538
NP_459540