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    string1 (C)C(T)A 
string2 T(A)GG(A)GGG(G)
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    string1 1 C A 
string1 3 T C 
string2 2 A C 
string2 5 A T 
string2 9 G A
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    string1 (C)C(T)A 
string1 (C)C(C)A 
string1 (A)C(T)A 
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string2 T(C)GG(A)GGG(G) 
string2 T(C)GG(T)GGG(A) 
string2 T(C)GG(T)GGG(A)