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  1. or download this
    #!/usr/bin/env perl

...
my $aln = $factory->align( $inputfilename );

exit;
  2. or download this
    >seq0
FQTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKF
...
KNWEDFEIAAENMYMANPQNCRYTMKYVHSKGHILLKMSDNVKCVQYRAENMPDLKK
>seq10
FDSWDEFVSKSVELFRNHPDTTRYVVKYRHCEGKLVLKVTDNHECLKFKTDQAQDAKKMEK
  3. or download this
    MUSCLE v3.8.31 by Robert C. Edgar

...
00:00:00      2 MB(0%)  Iter   4  100.00%  Refine biparts
00:00:00      2 MB(0%)  Iter   5  100.00%  Refine biparts
00:00:00      2 MB(0%)  Iter   6  100.00%  Refine biparts
  4. or download this
    >seq9
---KNWEDFEIAAENMYMANPQNCRYTMKYVHSKGHILLKMSDNVKCVQYRAENMPDLKK
...
>seq3
-MYQVWEEFSRAVEKLYLTDPMKVRVVLKYRHCDGNLCIKVTDNSVCLQYKTDQAQDVK-
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