Help for this page

Select Code to Download


  1. or download this
    #! perl -slw
    use strict;
    ...
    Lookup of 10000 14-nt short reads against a 5e6-nt sequence took 0.058
    +255196 secs
        182
    
  2. or download this
    1 x 5e6nt sequence; 10e3 x 14nt short reads; 
    Index prefix:   indexing(secs):   lookup(secs): found:   memory(MB):
    ...
     7              4.06               1.69         182      230
     8              6.17               0.42         182      244
    10              9.21               0.05         182      450