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  1. or download this
    #!/usr/bin/perl

...
        print "**** >$pdb_line< doesn't match >$line<\n";
    }
}
  2. or download this
    1  H  35
1  A  22
1  H  20
  3. or download this
    A  1 HB2 MET  1 
A  2 CA  MET  1
A  3 HA  MET  1
  4. or download this
    ./app.pl
A  1 HB2 MET  1 
****>A  2 CA  MET  1< doesn't match >1  A  22<
A  3 HA  MET  1