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  1. or download this
    use Data::Dumper;
    $Data::Dumper::Sortkeys = 1;
    
  2. or download this
    my ($cnt00, $cnt01, $cnt10, $cnt11) = (0) x 4;
    # add two lines
    ...
    die "missing \$nchar\n" if not $nchar;
    my ($first_site, $last_site) = $use_filtered ? @{$thresholds->{$dye}{'
    +indices'}} : (0, $nchar-1);