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#!/usr/bin/env perl
use strict;
...
    }
}

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data.txt
...
TACAGNGAGCAAACTGAAATGAAAAAGAAATTAATCAGCGGACTGTTTCTGATGTTATGGATGGCGCTGT
+TAATCGCAGCAATGGTGTATCCGCAGGGGATTTTTCCGGTACTGGCAGCGTCCGGCGTTTGGGTAGAGA
+TCGGAAGAGCAC
+
AAAAA#EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAEEEEEEEEAEEEAEEEEAEEAEEEE
+AEEEA//EEAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
+EEAAAEAEEEEA     2:data.txt

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data1.txt

...
+
AAAAA#EEEEEEEEAEEEEEEEEEEEEEEEEEEEEAEEEEEEEE/EEEAE6AE<EAEEAEAAEEAEEEEE
+EEAE/EEAEEAEEE6EEEEEAE6A/E<EEEEEEEEAE<EEEEEA/AEEAAEEEEEE//AEE/<<<EEAE
+<66/</AE<<A6     2:data1.txt

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data2.txt

...
+
AAAAA#EEEEEEEEAEEEEEEEEEEEEEEEEEEEEAEEEEEEEE/EEEAE6AE<EAEEAEAAEEAEEEEE
+EEAE/EEAEEAEEE6EEEEEAE6A/E<EEEEEEEEAE<EEEEEA/AEEAAEEEEEE//AEE/<<<EEAE
+<66/</AE<<A6     2:data2.txt

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output.txt
...
+
AAAAA#EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAEEEEEEEEAEEEAEEEEAEEAEEEE
+AEEEA//EEAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
+EEAAAEAEEEEA    2    2:data.txt