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use strict;
use warnings;
...
}
close (FILE);
close (NEW)

12345   DOE,JOHN   $50.00   REFUND   COMPLETE
12345   DOE,JOHN   $25.00   DENIED   COMPLETE
12345   DOE,JOHN   $75.00            COMPLETE
12345   DOE,JOHN   $10.00   REFUND   COMPLETE

12345,DOE,JOHN,$50.00,REFUND,COMPLETE
12345,DOE,JOHN,$25.00,DENIED,COMPLETE
12345,DOE,JOHN,$75.00,,COMPLETE
12345,DOE,JOHN,$10.00,REFUND,COMPLETE

12345,DOE,JOHN,$50.00,REFUND,COMPLETE
12345,DOE,JOHN,$25.00,DENIED,COMPLETE
12345,DOE,JOHN,$75.00,COMPLETE
12345,DOE,JOHN,$10.00,REFUND,COMPLETE