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J00153:42:HC5NCBBXX:6:1101:10896:14959
J00153:42:HC5NCBBXX:6:1101:10896:14959
J00153:42:HC5NCBBXX:6:1101:26616:20709
J00153:42:HC5NCBBXX:6:1101:27549:19935

 J00153:42:HC5NCBBXX:6:1101:10896:14959    99    gnl|Btau_4.6.1|chr16 
+   72729218    1    12M
J00153:42:HC5NCBBXX:6:1101:27549:19935    83    gnl|Btau_4.6.1|chr8   
+ 49556412    1    7M

# Open query file and read into array
$queryfile = $ARGV[0];
open (QUERYFILE, $queryfile) or die "Cannot open query file\n";
...
    }
    
exit;

# Open query file and read into array
$queryfile = $ARGV[0];
open (QUERYFILE, $queryfile) or die "Cannot open query file\n";
...
        }
    }
exit;