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# This script was excerpted from http://stackoverflow.com/questions/11
+678939/replace-text-based-on-a-dictionary
use strict;
...
  s/($re)/$dict{$1}/g;
  print;
}

 > grpsTbl <- read.csv("Orthogroups_3.csv", header=T, sep = "\t", row.
+names = 1, stringsAsFactors=F)
> dim(grpsTbl)
[1] 5791   13

 > grpsTbl <- read.csv("parsed_with_perl.csv", header=T, sep = "\t", r
+ow.names = 1, stringsAsFactors=F)
Error in read.table(file = file, header = header, sep = sep, quote = q
+uote,  : 
  more columns than column names