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#!/usr/bin/perl
use strict;
...
ACATCACCTCCCACAACGAGGACTACACCATCGTGGAACA
ACATCACCTCCCACAACGAGGACTACACCATCGTGGAACA
ACATCACCTC-CACAACGAGGACTACACCATCGTGGAACA

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```
C
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C
C
-
```