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#!/usr/bin/env perl

...
Pat6_Scan_comp_at_speed_m:30982      1  6162691 31966 .....hl.........
+................
Pat6_Scan_comp_at_speed_m:30985      1  6162694 31969 .....h..........
+................
Pat6_Scan_comp_at_speed_m:30986      1  6162695 31970 .....l..........
+................

25701 PD3 h
25794 PD9 h
...
31966 PD4 l
31969 PD5 h
31970 PD5 l