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  1. or download this
    for (my $i = 0; $i < $len; $i++) {
   $score += ((substr($ref_seq, $i, 1)) eq (substr($test_seq, $i, 1)))
+;
}
return ($score / $len);
  2. or download this
    string1: "EKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPA----SMMAYLVV"
string2: "ERFCRQLSSMASKLI-------ISPFTLVYYTYQCFQSTGWPVSIFGYFI"