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sub file_processing {
$script = "/export/home/ssesar/Perl/another_script.pl -e";
...
close FILE1;

}

$open = "$script $arg1 $file1";
open(FILE1, "$open |") or die "can't do it\n";

$open = "$script $arg2 $file2";
open(FILE2, "$open |") or die "can't do it\n";

@array1 = @_;

@array2 = @_;