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- get the user-specified sequence file, library file and cut-off perce
+ntage
- run fasta34.exe with the sequence file and library file
...
# you want to run fasta again, but I can't figure out what
# input you want to give it, how many times you really need
# to run it, or how you should use the subsequent output.

#!/usr/bin/perl

...
close OUT;

# and likewise for @org