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I check the tmp file and it had 3599 lines, I printed out 
the command from the perl script and appened it to 
mysql -e and got 3599 records.

[reports@clarkkent]/home/reports/ftp/WSB(29): ./b.pl
load data infile '/tmp/WSB_urls_CDyy' into table tmpurl fields termina
+ted by '|' (tstamp,url,count)
...
Done writing url DB
just done
[reports@clarkkent]/home/reports/ftp/WSB(30):