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  1. or download this
    sub merge {
        my ($s1, $s2) = @_;
    ...
        substr($s1,$pos) = $s2;
        return $s1;
    }
    
  2. or download this
    $ merge.pl ATTTA TTTAA
    ATTTAA
    ...
    ATGTA
    $ merge.pl ATGATG ATGATG
    ATGATG