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     my ($span, %matches) = @_;
 my ($site, $fastaseq, $fasta, $sitekey) = '';
...
            print "\$hit is: ",$matches{$fastaseq}{$sitekey}[$hit],"\n
+";
            if ($hit >= $lowerlimit && $hit <= $upperlimit) { #some co
+de
}}}}}
  2. or download this
    $matches{>LG_XIV}{0} is: ARRAY(0x182bb14)
Use of uninitialized value in print at MyScript line 386.
$hit is: 
$hit is: 6906413
Use of uninitialized value in numeric ge (>=) at MyScript line 388.