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for my $hElem (@{$matches{$element}{$sitekey}}) {
    print "...in \$hElem\n";
...
        push (@arrayA, $hElem);
        }
    }

for my $hElem (@{$matches{$element}{$sitekey}}) {
    next unless ($hElem >= $lowerlimit);
...
    print "...in \$hElem\n"   
    push (@arrayA, $hElem);
    }