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  1. or download this
    >  while ($i < $num) {
>     $sortedKeys[$i] = $i;
>     $i++;
>  }
  2. or download this
    @sortedKeys = (0 .. $num - 1);
  3. or download this
    >  next unless defined %{$matches{$fasta_id}};
>  last unless defined @{$matches{$fasta_id}{$site}};
  4. or download this
    >  # as @fastarray is global, this will have global effect, and we do 
+not need to return it.
>
>  @fastarray=@newfast;