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@sim = (
1.0,    0.9,    0.3,    0.6,    0.3,    0.3,    0.2,    0.3,    0.3,
...
0.1,    0.2,    0.2,    0.3,    0.3,    0.1,    1.0,    0.8,    0.6,
0.3,    0.3,    0.2,    0.4,    0.4,    0.3,    0.8,    1.0,    0.8,
0.3,    0.4,    0.4,    0.5,    0.5,    0.2,    0.6,    0.8,    1.0 );

@index_ordered = (
0, 1, 3, 2, 5, 8, 4, 7, 6,
...
);

# This is created manually

1.0, 0.9, 0.3, 0.6, 0.3, 0.3, 0.2, 0.3,0.3,

...

#this index value is seen "as if" it is stored in one array,
#and not the overall index in @sim

0, 1, 3, 2, 5, 8, 4, 7, 6,