or download this
the small rnas:CAGCGATGGGGATCAAGCTC
the sequnce thats being worked is CAGCGATGGGGATCAAGCTC
...
STACK: Bio::Tools::Run::StandAloneBlast::blastall /usr/local/share/per
+l/5.8.8/Bio/Tools/Run/StandAloneBlast.pm:557
STACK: aligning.pl:34