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  1. or download this
    the small rnas:CAGCGATGGGGATCAAGCTC
    the sequnce thats being worked is CAGCGATGGGGATCAAGCTC
    ...
    STACK: Bio::Tools::Run::StandAloneBlast::blastall /usr/local/share/per
    +l/5.8.8/Bio/Tools/Run/StandAloneBlast.pm:557
    STACK: aligning.pl:34
    
  2. or download this
    #!/usr/bin/perl -w
    
    ...
        
        }
    }