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Geneset=GO0035091    Size=77      ES=0.525    NES=2.913    NominalP=0.
+000    
Geneset=GO0030163    Size=54      ES=0.463    NES=2.248    NominalP=0.
+013    
Geneset=GO0007067    Size=44      ES=0.484    NES=1.975    NominalP=0.
+018

GO0046800    GO0046800    CD209    CD209L    CD209L1    CD209_HUMAN   
+ CLC4M  
GO0032104    GO0032104    CART    CARTPT    CART_HUMAN    GHRL    GHRL
+_HUMAN
.........    ..........    .....    ......    ..........    ....    ..
+........
.........    ..........    .....    ......    ..........    ....    ..
+........
GO0035091    GO0035091    41_HUMAN    5NTD_HUMAN    9804    A-388D4.1 
+   .....

rs10904494    NP_817124    17881
rs7906287    NP_817124    39800
rs4881551    41_HUMAN    21567
rs5416721    5NTD_HUMAN    0
....................     ..............    ....

Marker             CHI2
rs3749375    11.7268615355335
rs10499549    10.4656064706897
rs5416721    9.85374546064131

Geneset        Genes        SNP/Marker    ES    NES        NominalP
GO0035091    41_HUMAN    rs4881551    ....    .......    ....
            5NTD_HUMAN    rs5416721    ....    .......    ....    
....................    ....................    ..................

open(OUTPUT, "<C:\\Documents and Settings\\shra1\\Desktop\\prj\\schnei
+der_breast_copy_num_pathway_enrichment1.txt");
@output = <OUTPUT>;
close(OUTPUT);
...
                }
    }
    }