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    KPHVNVGTIGHVDHGKTTL-------AISHVLAKTYGGEAKDFSQ--------IDNAP  
KPVLNVAFIGHVDAGKSTTVGRLLLDSGTIDPQIIERLKREASEKGKAGFEFAYVMDGLK
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    $qgapstart= $-[0]; 

$qgapend= $+[0];