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#RAW data
chr1q21    na    S100A3    S100A6    HRNR    DRD5P2    .......    
...
module_486    na    CYP3A7    C14orf179    JAG2    INTS1    RBM6    ..
CATABOLIC_PROCESS    na    PGD    HNRPD    USE1    RNF217    RNASEH1
#second word can be eleminated

#Map data
XRCC5    SNP_A-1966881    1
...
XRCC5    SNP_A-1966884    1
XRCC5    SNP_A-1966882    1
HRNR    SNP_A-1829030    1

chr1q21 
      HRNR    SNP_A-1829030    1
...
      XRCC5    SNP_A-1966882    1
      XRCC5    SNP_A-1966881    1
.......

#Actually is a subroutine which is a part of my other program:
sub parseGeneEntry {  ##purpose of this function is to return everythi
+ng from the second tab onwards (these are the genes)
...
    return($toReturn);
}