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my @array = qq/$command $arg1 $arg2 $arg3 > $outfile/;
system "@array";

my @array = ($command, "$arg1 $arg2 $arg3 > $outfile");

Clover: Cis-eLement OVERrepresentation
Compiled on Jul 18 2006
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Error: motif and sequence files required

Usage summary: clover [options] mymotifs myseqs.fa [BGfiles]