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Use of uninitialized value in hash element at TEST.pl line 17, <$fh> l
+ine 4.
Use of uninitialized value in hash element at TEST.pl line 18, <$fh> l
+ine 4.
...
KEY 155369268: File2 string length too short for File1 position value
KEY 155369268: File2 string length too short for File1 position value
KEY 269212605: File2 string length too short for File1 position value

#!/usr/bin/perl

...


}

 
File 1:-
155369268 17 A 
...
>gi|269212605|ref|XM_401716884.1| some text 
AGACAAGCTTGTCCTGATGTTCCTTGCCCTGGCAGATGTTCAGGACCTTCCTTTGATTCAACCCTATGAC
CTAATTGGCCCAAGCTTTCGGGGCTGTCATTGTCTGTTTGTCATTCAAGGGCCCAAGCTGAAGAGGGGGT

155369268 17 CTA 
155369268 70 CGA
269212605 120 TTG