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open(FILE1,"file1.txt") or die $!;@file1=<FILE1>;close(FILE1);
open(FILE2,"file2.txt") or die $!;@file2=<FILE2>;close(FILE2);
...
                }
        }
}

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>AAAT3R_left length=6
40 40 40 40 40 40
...

>AAA2OJ_right length=14
37 37 37 37 3737 33 32 32 30 20 17 17 17 0