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if ($fsline =~ /(.:\\.*)/){
   $dir = $1;
   print "$dir\n";  #works fine here
}

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$badhost = "$logdir\\BADHOST.csv";
open (BADHOST,">>$badhost");
$dest = "$dir\\$file";  #will print redundancies here
$dest =~ s/[\s]//g;
$md5sumtmp = `rctrlx.exe $target /u "domain\\username" /p "password" /
+c md5sum.exe /app md5sum.exe $dest`;