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  1. or download this
    while (<DATA>) {
    if (/^>.*predicted_CDS/ ... /^$/) {
...
atgaggaagaatgagggtgttgatgatgcagatccactaatagaaggtatgaaggagatc
actctgaaagattcagcaactccagaagacaaggatcaagaagacaaacaagatgagaga
ggtgaagaaattcaagaacaacctcaagagatgtag
  2. or download this
    pointo1d@unforgiven:~$ perl tst.pl
PEP: >scaffold_2|GENSCAN_predicted_peptide_1|48_aa
...
CDS: actctgaaagattcagcaactccagaagacaaggatcaagaagacaaacaagatgagaga
CDS: ggtgaagaaattcaagaacaacctcaagagatgtag
pointo1d@unforgiven:~$