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#!/usr/bin/perl

...
           elsif($_ =~ /\/transcript_id\=\"(\S+)\"/) {print "\t\t$gi\t
+\t\t\t\tTranscriptID=$1\n";}

 }

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     gene         348634..348822
                     /gene="LOC100129305"
...
                     /transcript_id="XM_001714760.1"
                     /db_xref="GI:169215265"
                     /db_xref="GeneID:100129305"

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           gene   348634   348822   
                                 gene=LOC100129305
...
                                 gene=LOC100129305
                                 TranscriptID=XM_001714760.1

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           gene   348634   348822   gene=LOC100129305
           gene   348634   348822   gene=LOC100129305    TranscriptID=
+XM_001714760.1