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    GeneX,GeneY,GeneP,spc1,spc2 
GeneY,spc3,spc4 
GeneZ,spc3,spc4
  2. or download this
    Desired Result 
GeneX,GeneY,GeneP,GeneZ,spc1=1,spc2=1,spc3=2,spc4=2